AMICI | Advanced Multilanguage Interface to CVODES and IDAS

 by   AMICI-dev Jupyter Notebook Version: 0.14.0 License: Non-SPDX

kandi X-RAY | AMICI Summary

kandi X-RAY | AMICI Summary

AMICI is a Jupyter Notebook library typically used in Simulation applications. AMICI has no bugs, it has no vulnerabilities and it has low support. However AMICI has a Non-SPDX License. You can download it from GitHub.

AMICI provides a multi-language (Python, C++, Matlab) interface for the SUNDIALS solvers CVODES (for ordinary differential equations) and IDAS (for algebraic differential equations). AMICI allows the user to read differential equation models specified as SBML or PySB and automatically compiles such models into Python modules, C++ libraries or Matlab .mex simulation files. In contrast to the (no longer maintained) sundialsTB Matlab interface, all necessary functions are transformed into native C++ code, which allows for a significantly faster simulation. Beyond forward integration, the compiled simulation file also allows for forward sensitivity analysis, steady state sensitivity analysis and adjoint sensitivity analysis for likelihood-based output functions. The interface was designed to provide routines for efficient gradient computation in parameter estimation of biochemical reaction models but it is also applicable to a wider range of differential equation constrained optimization problems.
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            kandi-support Support

              AMICI has a low active ecosystem.
              It has 91 star(s) with 27 fork(s). There are 12 watchers for this library.
              OutlinedDot
              It had no major release in the last 12 months.
              There are 88 open issues and 740 have been closed. On average issues are closed in 216 days. There are 7 open pull requests and 0 closed requests.
              It has a neutral sentiment in the developer community.
              The latest version of AMICI is 0.14.0

            kandi-Quality Quality

              AMICI has 0 bugs and 0 code smells.

            kandi-Security Security

              AMICI has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.
              AMICI code analysis shows 0 unresolved vulnerabilities.
              There are 0 security hotspots that need review.

            kandi-License License

              AMICI has a Non-SPDX License.
              Non-SPDX licenses can be open source with a non SPDX compliant license, or non open source licenses, and you need to review them closely before use.

            kandi-Reuse Reuse

              AMICI releases are available to install and integrate.
              Installation instructions, examples and code snippets are available.

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            AMICI Key Features

            No Key Features are available at this moment for AMICI.

            AMICI Examples and Code Snippets

            No Code Snippets are available at this moment for AMICI.

            Community Discussions

            QUESTION

            Conditionally adding a XElement to a new XElement using c~
            Asked 2022-Jan-10 at 08:07

            I am trying to use XElement to add new content to an existing XML data file.

            For the most part it is working OK but I need to change it. This is what I have so far:

            ...

            ANSWER

            Answered 2022-Jan-09 at 23:26

            You can take advantage of the fact that null nodes are ignored, so make a condition where you pass null when the condition is not met. Here is the basic idea:

            Source https://stackoverflow.com/questions/70646163

            QUESTION

            Music Bot doesn't connect to Voice channel
            Asked 2021-Sep-29 at 23:20

            Trying to make a simple music bot that only plays one link, but it doesn't connect to the voice channel, it doesn't give as a result any error so I can't do anything other than put all my code. Here is my Main.js

            ...

            ANSWER

            Answered 2021-Sep-29 at 23:20

            First of all, I'd recommend you change your listener from .on('message') to .on('messageCreate'). The former is deprecated and the latter works better.

            More to the point, you are passing the wrong variables in your joinVoiceChannel() code. The guildid and channelid properties are of type Snowflake while the fields take strings. Just do it like so:

            Source https://stackoverflow.com/questions/69382593

            QUESTION

            Adding a class to element when it is visible (in viewport)
            Asked 2020-Nov-19 at 15:29

            css on my website but I would like the animation to start only when the element appears on the page.

            I have something like this:

            HTML

            ...

            ANSWER

            Answered 2020-Nov-19 at 14:43

            As mentioned by TKoL you can look into the Intersection Observer API. But if you want an easier solution, i created this example on Codepen

            Source https://stackoverflow.com/questions/64913368

            QUESTION

            Scrape information from meta and button tags with rvest
            Asked 2020-Sep-12 at 15:25

            I am trying to scrape the average user ratings (out of 5 stars) and number of ratings from a wine seller's page. The average stars our of 5 seems to be in a button tag while the number of rating is in a meta tag.
            Here is the HTML:

            ...

            ANSWER

            Answered 2020-Sep-12 at 15:25

            Open the Network tab of Dev Tool and reload the page, you'll see that this page loads data from https://www.totalwine.com/product/api/product/product-detail/v1/getProduct/20095750-1?shoppingMethod=INSTORE_PICKUP&state=US-CA&storeId=918 (which is a JSON file): Get the rating and review count you want by this:

            Source https://stackoverflow.com/questions/63861669

            QUESTION

            Firebase and swiftUI, listening for real time update strange behave weird
            Asked 2020-Jul-26 at 08:28

            On my project I'm using firebase Cloud Firestore in order to implement a similar system like "Facebook" to request and confirm friends.

            On my app some user are Administrator and some just normal user.

            Only normal user can search and add Administrator in order to join some specific event scheduled from the administrator.

            here below how is my data in Cloud Firestore :

            every user have collection with pending and confirm friends.

            I' m using a view to list all the pending and confirm friends for each user

            using the .addSnapshotListener {} of firebase I'm checking with the following function every time there is a change on the confirm and pending friend and I publish the change in 2 @Published arrays, pendingFriendsADMIN = [UserMOdel] and confirmedFriendADMIN = [UserMOdel]

            ...

            ANSWER

            Answered 2020-Jul-26 at 08:28

            Some suggestions that maybe helps:

            1. Implement listener state control: These help to control when a user add, modify or remove a record, helps not to reload all data and allow not to duplicate events, for example in the code below I get all users (event documentChange.add) if a new user is added you don't reload all users array.

            Api:

            Source https://stackoverflow.com/questions/63088521

            QUESTION

            Creating a dataframe from scraping content
            Asked 2020-May-10 at 15:41

            I would need to create a dataset that shows the list of urls and images. The dataset should have two columns and as many rows as the links:

            ...

            ANSWER

            Answered 2020-May-10 at 15:41

            You could append tuples containing the website link and image information to your list_images and then create a dataframe based on this list of values in the end.

            Source https://stackoverflow.com/questions/61713891

            QUESTION

            Scraping images from websites without getting HTTP errors
            Asked 2020-May-09 at 21:04

            I have the following list of websites:

            ...

            ANSWER

            Answered 2020-May-09 at 20:43

            403 Forbidden – you don’t have permission to access That's meen you can not get html file from this url. You can try use proxy

            Proxies with Python 'Requests' module

            Source https://stackoverflow.com/questions/61702699

            Community Discussions, Code Snippets contain sources that include Stack Exchange Network

            Vulnerabilities

            No vulnerabilities reported

            Install AMICI

            The AMICI source code is available at https://github.com/AMICI-dev/AMICI/. To install AMICI, first read the installation instructions for Python, C++ or Matlab. To get you started with Python-AMICI, the best way might be checking out this Jupyter notebook. To get started with Matlab-AMICI, various examples are available in matlab/examples/. Comprehensive documentation is available at https://amici.readthedocs.io/en/latest/. Any contributions to AMICI are welcome (code, bug reports, suggestions for improvements, ...).

            Support

            In case of questions or problems with using AMICI, feel free to post an issue on GitHub. We are trying to get back to you quickly.
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